Results generated by running the recipe.
Parameters used during the run:
Read 10000 spots for SRR6848054 Written 10000 spots for SRR6848054 Read 10000 spots for SRR6848065 Written 10000 spots for SRR6848065 Read 10000 spots for SRR6848055 Written 10000 spots for SRR6848055 Read 10000 spots for SRR6848033 Written 10000 spots for SRR6848033 Read 10000 spots for SRR6848056 Written 10000 spots for SRR6848056
+ SRA=/export/sra + PRJN=SRP135886 + RUNS=5 + READS=10000 + esearch -db sra -query SRP135886 + efetch -format runinfo + cat runinfo.csv + grep SRR + head -5 + cut -f 1 -d , + cat runids.txt + parallel fastq-dump --split-files -X 10000 --outdir /export/sra '{}' + mkdir -p fastqc + fastqc -o fastqc 'reads/*.fastq' Skipping 'reads/*.fastq' which didn't exist, or couldn't be read + rm -f 'fastqc/*.zip'