Results generated by running the recipe.
Building a new DB, current time: 10/21/2020 12:11:09 New DB name: /export/www/biostar-central/export/media/jobs/job-1299/db/ebov_prots New DB title: db/proteins.fa Sequence type: Protein Keep MBits: T Maximum file size: 1000000000B Adding sequences from FASTA; added 2240 sequences in 0.0535531 seconds. Building a new DB, current time: 10/21/2020 12:11:09 New DB name: /export/www/biostar-central/export/media/jobs/job-1299/db/ebov_genomes New DB title: db/genomes.fa Sequence type: Nucleotide Keep MBits: T Maximum file size: 1000000000B Adding sequences from FASTA; added 249 sequences in 0.0344551 seconds. Database: db/proteins.fa 2,240 sequences; 1,367,025 total residues Date: Oct 21, 2020 12:11 PM Longest sequence: 2,212 residues BLASTDB Version: 4 Volumes: /export/www/biostar-central/export/media/jobs/job-1299/db/ebov_prots
+ mkdir -p db + esearch -db protein -query PRJNA257197 + efetch -format fasta + esearch -db nuccore -query PRJNA257197 + efetch -format fasta + makeblastdb -in db/proteins.fa -dbtype prot -out db/ebov_prots -parse_seqids + makeblastdb -in db/genomes.fa -dbtype nucl -out db/ebov_genomes -parse_seqids + blastdbcmd -db db/ebov_prots -info + echo '>mystery' + echo ATGGACTCTCGTCCTCAGAAAGTCTGGATGACGCCGAGTCTCACTGAATCTGACATGGAT + echo TACCACAAGATCTTGACAGCAGGTCTGTCCGTTCAACAGGGGGTTGTTCGGCAAAGAGTC + echo ATCCCAGTGTATCAAGTAAACAATCTTGAG + F='6 qacc sacc pident qlen length frames' + blastn -db db/ebov_genomes -query foo.fa -outfmt '6 qacc sacc pident qlen length frames' + sort -k 3rn + blastx -db db/ebov_prots -query foo.fa -outfmt '6 qacc sacc pident qlen length frames' + sort -k 3rn + tblastx -db db/ebov_genomes -query foo.fa -outfmt '6 qacc sacc pident qlen length frames' + sort -k 3rn