Applied Bioinformatics Course Recipes

Results generated by running the recipe.

File List
Files created by the recipe run:
Output Messages
Messages printed to the standard output stream:
Database: 16S ribosomal RNA (Bacteria and Archaea type strains)
	21,394 sequences; 31,113,717 total bases

Date: Oct 10, 2020  12:32 PM	Longest sequence: 3,600 bases

BLASTDB Version: 5

Volumes:
	/home/www/blastdb/16S_ribosomal_RNA
 
 
Other Messages
Messages printed to the standard error stream:
+ DBNAME=16S_ribosomal_RNA
+ export BLASTDB=/home/www/blastdb
+ BLASTDB=/home/www/blastdb
+ mkdir -p /home/www/blastdb
+ set +e
+ cd /home/www/blastdb
+ update_blastdb.pl --quiet --decompress 16S_ribosomal_RNA
+ set -e
+ blastdbcmd -db 16S_ribosomal_RNA -info
+ blastdbcmd -db 16S_ribosomal_RNA -entry NR_026093
+ blastdbcmd -db 16S_ribosomal_RNA -entry all -range 1-20
+ echo ' '
+ blastdbcmd -db 16S_ribosomal_RNA -entry NR_026093 -range 1-20
+ echo ' '
+ blastdbcmd -db 16S_ribosomal_RNA -entry all
+ blastdbcmd -db 16S_ribosomal_RNA -entry all -outfmt '%a %l'

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