FastQCFastQC Report
Thu 25 Apr 2019
SRR1972917_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1972917_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000
Sequences flagged as poor quality0
Sequence length101
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT20310.15No Hit
ATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTT1216.05TruSeq Adapter, Index 1 (95% over 21bp)
ACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCT1005.0RNA PCR Primer, Index 1 (95% over 23bp)
CATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCT190.95TruSeq Adapter, Index 1 (96% over 26bp)
TTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTC190.95No Hit
CACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTG140.7000000000000001TruSeq Adapter, Index 1 (95% over 24bp)
TATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCT140.7000000000000001No Hit
CTTTACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTC110.5499999999999999No Hit
ACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGC60.3Illumina PCR Primer Index 5 (95% over 24bp)
CTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTC50.25No Hit
TATCACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTT50.25TruSeq Adapter, Index 1 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATATCGTATGCCGT50.25No Hit
TTCATAGCCCCACGACATAGTTTTTAGTCATTACGTAGCCGTTATAGAAA30.15No Hit
GTATAAGACGGTGTTTATTCCTACCGGTTAAAATCACACGGACGTTAGTG30.15No Hit
GAGATGTGTATAAGAGACAGACACATCTCCGAGCCCACGAGACTAGGCAT30.15No Hit
CTTATAACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCG30.15No Hit
CTTATCACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTC30.15No Hit

[OK]Adapter Content

Adapter graph