FastQCFastQC Report
Thu 25 Apr 2019
SRR1972920_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1972920_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000
Sequences flagged as poor quality0
Sequence length101
%GC61

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCCCCTGAGACAGAGTCGCTATCGTTATGTCTCCTTCCCGCGGTCAAG60.3No Hit
GCCCTAACTGCGCAGTTAATAATTCTGGCAATTCGTCTCCACACTAGAAG60.3No Hit
CACCTAAAGTATGCTGCAAACATATGCAGATCCCCTGAGACAGAGTCGCT60.3No Hit
GTGCTAGCCCGTCGAGACTGAAAAGCTATAACCCGCAGACCCGAGCGAAA50.25No Hit
GTTTTGACTGCGGAAGGAAGCCAAGGCCCACCTAAAGTATGCTGCAAACA50.25No Hit
CACTAGAAGTCGACGAACAACGAAGAGCGACGATGCCCGTTTCAGGTGGT50.25No Hit
CATATGCAGATCCCCTGAGACAGAGTCGCTATCGTTATGTCTCCTTCCCG40.2No Hit
GTTAATAATTCTGGCAATTCGTCTCCACACTAGAAGTCGACGAACAACGA40.2No Hit
GTCTCGGACTGCGTGGATCCACTCGACGTCGGCATCTACTTGGTAGCTTC40.2No Hit
GTCCTCCGTGCTTGTGTGAGTCGACACATAGGATCGGGCACGGAGAGATC40.2No Hit
CTATCGTTATGTCTCCTTCCCGCGGTCAAGGCGAAACCGCAGCAAACTTC40.2No Hit
GTACAGGACGGGACGAGCGGGCCAAGCGGGTGAGAGTGGATGAGGCGGGG30.15No Hit
GGTATTTGCTGTAAAGAGGGGCGTTGAGTCCGTCCGACTTCACTGCCCCC30.15No Hit
CCACTGAGGAGGCTTGCCATGCGCTATTCGTTTCTCTGCTCTGTCGCACT30.15No Hit
CCGCAGCAAACTTCCTCAGACGCTGCCCTAACTGCGCAGTTAATAATTCT30.15No Hit
GTAGTATCGTGTACTTGGCGGAGTAGCGAGAAGCGCCGCGGCGGGGACGG30.15No Hit
CGGAACCACTCTGGGCATGGCCGTCACCGGTGATATGGCAGGGGGGTCCT30.15No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)