FastQCFastQC Report
Thu 25 Apr 2019
SRR1972921_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1972921_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000
Sequences flagged as poor quality0
Sequence length101
%GC57

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT21810.9No Hit
ATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTT1477.35TruSeq Adapter, Index 1 (95% over 21bp)
ACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCT984.9RNA PCR Primer, Index 1 (95% over 23bp)
CATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCT301.5TruSeq Adapter, Index 1 (96% over 26bp)
CACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTG190.95TruSeq Adapter, Index 1 (95% over 24bp)
TTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTC190.95No Hit
TATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCT110.5499999999999999No Hit
CTTTACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTC100.5No Hit
TATCACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTT50.25TruSeq Adapter, Index 1 (95% over 21bp)
TTACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTT50.25No Hit
ATACACATCTCCGAGCCCACGAGACTAGGCATGATATCGTATGCCGTCTT40.2No Hit
GAGATGTGTATAAGAGACAGACACATCTCCGAGCCCACGAGACTAGGCAT40.2No Hit
CTTAATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCG30.15No Hit
CTTAACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTC30.15No Hit
CTTATAACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCG30.15No Hit

[WARN]Adapter Content

Adapter graph