[bwa_index] Pack FASTA... 0.00 sec
[bwa_index] Construct BWT for the packed sequence...
[bwa_index] 0.01 seconds elapse.
[bwa_index] Update BWT... 0.00 sec
[bwa_index] Pack forward-only FASTA... 0.00 sec
[bwa_index] Construct SA from BWT and Occ... 0.01 sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa index refs/AF086833.fa
[main] Real time: 0.372 sec; CPU: 0.020 sec
[dwgsim_core] AF086833.2 length: 18959
[dwgsim_core] 1 sequences, total length: 18959
[dwgsim_core] Currently on: 
0
[dwgsim_core] 0
[dwgsim_core] 10000
[dwgsim_core] 14255
[dwgsim_core] Complete!
[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 28510 sequences (1995700 bp)...
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (0, 13482, 0, 0)
[M::mem_pestat] skip orientation FF as there are not enough pairs
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (466, 499, 533)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (332, 667)
[M::mem_pestat] mean and std.dev: (499.68, 50.02)
[M::mem_pestat] low and high boundaries for proper pairs: (265, 734)
[M::mem_pestat] skip orientation RF as there are not enough pairs
[M::mem_pestat] skip orientation RR as there are not enough pairs
[M::mem_process_seqs] Processed 28510 reads in 0.484 CPU sec, 0.486 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem refs/AF086833.fa simulated.bwa.read1.fastq simulated.bwa.read2.fastq
[main] Real time: 0.540 sec; CPU: 0.500 sec