[bwa_index] Pack FASTA... 0.00 sec
[bwa_index] Construct BWT for the packed sequence...
[bwa_index] 0.01 seconds elapse.
[bwa_index] Update BWT... 0.00 sec
[bwa_index] Pack forward-only FASTA... 0.00 sec
[bwa_index] Construct SA from BWT and Occ... 0.01 sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa index ref/AF086833.fa
[main] Real time: 0.402 sec; CPU: 0.016 sec
Read 10000 spots for SRR1972739
Written 10000 spots for SRR1972739
[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 20000 sequences (2020000 bp)...
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (738, 5739, 6, 663)
[M::mem_pestat] analyzing insert size distribution for orientation FF...
[M::mem_pestat] (25, 50, 75) percentile: (74, 114, 180)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 392)
[M::mem_pestat] mean and std.dev: (131.35, 75.24)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 498)
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (174, 220, 276)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 480)
[M::mem_pestat] mean and std.dev: (227.70, 77.37)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 582)
[M::mem_pestat] skip orientation RF as there are not enough pairs
[M::mem_pestat] analyzing insert size distribution for orientation RR...
[M::mem_pestat] (25, 50, 75) percentile: (77, 122, 175)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 371)
[M::mem_pestat] mean and std.dev: (131.18, 71.99)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 469)
[M::mem_process_seqs] Processed 20000 reads in 0.968 CPU sec, 0.983 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem ref/AF086833.fa SRR1972739_1.fastq SRR1972739_2.fastq
[main] Real time: 1.024 sec; CPU: 0.984 sec