Readseq version 2.1.30 (12-May-2010) Readseq version 2.1.30 (12-May-2010) [bwa_index] Pack FASTA... 0.02 sec [bwa_index] Construct BWT for the packed sequence... [bwa_index] 0.45 seconds elapse. [bwa_index] Update BWT... 0.01 sec [bwa_index] Pack forward-only FASTA... 0.02 sec [bwa_index] Construct SA from BWT and Occ... 0.25 sec [main] Version: 0.7.17-r1188 [main] CMD: bwa index ref/CP000253.fa [main] Real time: 1.280 sec; CPU: 0.748 sec [wgsim] seed = 1541689070 [wgsim_core] calculating the total length of the reference sequence... [wgsim_core] 1 sequences, total length: 2821361 [M::bwa_idx_load_from_disk] read 0 ALT contigs [M::process] read 142858 sequences (10000060 bp)... [M::process] read 107142 sequences (7499940 bp)... [M::mem_process_seqs] Processed 142858 reads in 2.088 CPU sec, 2.054 real sec [M::mem_process_seqs] Processed 107142 reads in 1.616 CPU sec, 1.568 real sec [main] Version: 0.7.17-r1188 [main] CMD: bwa mem ref/CP000253.fa reads/sim1.fastq [main] Real time: 3.800 sec; CPU: 3.768 sec [M::bwa_idx_load_from_disk] read 0 ALT contigs [M::process] read 131580 sequences (10000080 bp)... [M::process] read 118420 sequences (8999920 bp)... [M::mem_process_seqs] Processed 131580 reads in 3.792 CPU sec, 3.755 real sec [M::mem_process_seqs] Processed 118420 reads in 3.424 CPU sec, 3.372 real sec [main] Version: 0.7.17-r1188 [main] CMD: bwa mem ref/CP000253.fa reads/SRR397558_1.fastq [main] Real time: 7.345 sec; CPU: 7.292 sec