[bwa_index] Pack FASTA... 0.00 sec
[bwa_index] Construct BWT for the packed sequence...
[bwa_index] 0.00 seconds elapse.
[bwa_index] Update BWT... 0.00 sec
[bwa_index] Pack forward-only FASTA... 0.00 sec
[bwa_index] Construct SA from BWT and Occ... 0.00 sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa index refs/KM034562.fa
[main] Real time: 0.300 sec; CPU: 0.004 sec
[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 20000 sequences (2020000 bp)...
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (756, 5834, 6, 677)
[M::mem_pestat] analyzing insert size distribution for orientation FF...
[M::mem_pestat] (25, 50, 75) percentile: (75, 115, 181)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 393)
[M::mem_pestat] mean and std.dev: (132.00, 75.72)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 499)
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (174, 220, 276)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 480)
[M::mem_pestat] mean and std.dev: (227.84, 77.33)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 582)
[M::mem_pestat] skip orientation RF as there are not enough pairs
[M::mem_pestat] analyzing insert size distribution for orientation RR...
[M::mem_pestat] (25, 50, 75) percentile: (77, 122, 177)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 377)
[M::mem_pestat] mean and std.dev: (131.56, 71.38)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 477)
[M::mem_process_seqs] Processed 20000 reads in 0.732 CPU sec, 0.732 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem refs/KM034562.fa SRR1972739_1.fastq SRR1972739_2.fastq
[main] Real time: 0.859 sec; CPU: 0.744 sec