FastQCFastQC Report
Mon 10 Feb 2020
SRR10902284_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10902284_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences261890
Sequences flagged as poor quality0
Sequence length80-3227
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC45091.7217152239489861No Hit
GTTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC35161.3425483981824429No Hit
CATTGTGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC10240.3910038565810073No Hit
CAGTATGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC10050.3837489022108519No Hit
CGGTATGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC9000.34365573332315097No Hit
GTTGTGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC7710.29439841154683266No Hit
CAGTATTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTG7590.28981633510252397No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6950.265378594066211No Hit
CAGTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC6580.2512505250295926No Hit
CGGTATTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTG6110.23330405895605028No Hit
ATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC5920.22604910458589483No Hit
CAGTATTGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTG5800.22146702814158617No Hit
CATTGTACTTCGTTCGGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC5770.22032150903050898No Hit
CATTGTACTTCGTTCAGTTACGTATTGCTAAAGGTTAAGACTACTTTCTG5020.19168353125357976No Hit
CGGTATTGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTG5010.19130169154988735No Hit
GTTGTACTTCGTTCAGTTACGTATTGCTAAAGGTTAAGACTACTTTCTGC4130.15769979762495703No Hit
GGTATGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC4090.1561724388101875No Hit
GATGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC3660.13975333155141473No Hit
GTTGTACTTCGTTCGGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC3330.12715262132956584No Hit
CGATGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC3020.11531559051510176No Hit
CATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAGACTACTTTCTG3010.11493375081140936No Hit
CAATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTG2940.11226087288556265No Hit
GTTATTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC2910.11111535377448546No Hit
GTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCCT2880.1099698346634083No Hit
CAGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCCT2780.10615143762648441No Hit
GTTATGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC2690.10271488029325289No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)