FastQCFastQC Report
Mon 10 Feb 2020
SRR10948474_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10948474_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505484
Sequences flagged as poor quality0
Sequence length88-8584
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGC119882.371588418228866No Hit
GTTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGCT104732.0718756676769194No Hit
CAGTATGCTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGC28260.5590681406335315No Hit
CGGTATGCTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGC25030.4951689865554597No Hit
CATTGTGCTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGC22350.44215049338851475No Hit
CAGTATTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCG22150.4381938894208323No Hit
CAGTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGC22100.43720473842891167No Hit
GTTGTGCTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGCT18060.35728133828172604No Hit
CGGTATTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCG17010.3365091674513931No Hit
CAGTATTGCTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCG15820.3129673738436825No Hit
CATTGTACTTCGTTCGGTTACGTATTGCTAAGGTTAAAACCAAGACTCGC14530.2874472782521306No Hit
CGGTATTGCTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCG13630.26964256039755957No Hit
ATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGCT11840.23423095488680157No Hit
CATTGTACTTCGTTCAGTTACGTATTGCTAGGTTAAAACCAAGACTCGCT11720.23185699250619207No Hit
GATGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGCT9940.19664321719381822No Hit
GTTGTACTTCGTTCGGTTACGTATTGCTAAGGTTAAAACCAAGACTCGCT9610.19011482064714214No Hit
CATTGTACTTCGTTCAGTTACGTATTGCTAAAGGTTAAAACCAAGACTCG9440.18675170727461204No Hit
GGTATGCTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGCT9420.18635604687784382No Hit
GTTGTACTTCGTTCAGTTACGTATTGCTAAAGGTTAAAACCAAGACTCGC9230.18259727310854545No Hit
GTTGTACTTCGTTCAGTTACGTATTGCTAGGTTAAAACCAAGACTCGCTG9120.1804211409263201No Hit
CAATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCG9100.18002548052955186No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN8790.17389274437964408No Hit
CATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAAACCAAGACTCG8760.17329925378449168No Hit
GTTATTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGC8290.16400123446043793No Hit
CATTGTACTTCGTTCCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCG8210.1624185928733649No Hit
GTTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAAACCAAGACTCGC7180.14204208243980027No Hit
CATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAGCCAAGACTCGC7130.14105293144787964No Hit
CGGTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGC7040.13927245966242255No Hit
CATTGTACTTCGTTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCG6600.13056793093352115No Hit
CGTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGCT6530.1291831195448323No Hit
GTTGTACTTCGTTCCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGC6440.12740264775937518No Hit
GTTATGCTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGCT6360.1258200061723022No Hit
GTTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAGCCAAGACTCGCT6060.1198851002207785No Hit
CGATGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGC6010.11889594922885789No Hit
CGGTAGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCG5880.11632415664986429No Hit
CAGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGCTG5780.11434585466602305No Hit
GTTGTACTTCGTTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGC5710.1129610432773342No Hit
GTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCGCTG5650.11177406208702945No Hit
CAGTAGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACCAAGACTCG5460.10801528831773112No Hit
CATTGTACTTCGTTCCGGTTACGTATTGCTAAGGTTAAAACCAAGACTCG5300.10485000514358517No Hit
CATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAACCAAGACTCGCT5240.10366302395328042No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)