FastQCFastQC Report
Mon 10 Feb 2020
SRR10948550_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10948550_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425717
Sequences flagged as poor quality0
Sequence length80-3227
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC65411.5364667138028314No Hit
GTTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC47531.116469391638107No Hit
CAGTATGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC14000.3288569636636545No Hit
CATTGTGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC13390.31452819596116666No Hit
CGGTATGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC12620.2964410629596657No Hit
CAGTATTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTG10580.24852190539724747No Hit
GTTGTGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC10270.2412400726304094No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN9730.22855558974623985No Hit
CAGTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC9130.2144617198749404No Hit
ATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC8750.20553560228978407No Hit
CATTGTACTTCGTTCGGTTACGTATTGCTAAGGTTAAGACTACTTTCTGC8560.20107254349720588No Hit
CGGTATTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTG8080.18979744760016629No Hit
CAGTATTGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTG7830.18392500182045818No Hit
CATTGTACTTCGTTCAGTTACGTATTGCTAAAGGTTAAGACTACTTTCTG7650.17969684085906837No Hit
CGGTATTGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTG6750.15855603605211913No Hit
GGTATGCTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC5910.13882461823229986No Hit
GTTGTACTTCGTTCAGTTACGTATTGCTAAAGGTTAAGACTACTTTCTGC5870.13788502690754656No Hit
GATGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC4840.11369055029514913No Hit
CATTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAGACTACTTTCTG4790.11251606113920751No Hit
GTTGTACTTCGTTCGGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCC4550.10687851319068772No Hit
GTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAGACTACTTTCTGCCT4420.1038248413852395No Hit

[OK]Adapter Content

Adapter graph