FastQCFastQC Report
Wed 26 Sep 2018
SRR1972975.trimmed_1P.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1972975.trimmed_1P.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5285
Sequences flagged as poor quality0
Sequence length2-101
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA180.34058656575212864RNA PCR Primer, Index 31 (96% over 29bp)
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA160.30274361400189215RNA PCR Primer, Index 31 (96% over 29bp)
ATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA150.28382213812677387RNA PCR Primer, Index 31 (96% over 29bp)
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAA150.28382213812677387RNA PCR Primer, Index 31 (96% over 29bp)
ATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA150.28382213812677387RNA PCR Primer, Index 31 (96% over 29bp)
ACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA120.2270577105014191RNA PCR Primer, Index 31 (96% over 29bp)
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAA90.17029328287606432RNA PCR Primer, Index 31 (96% over 29bp)
ACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAA80.15137180700094607RNA PCR Primer, Index 31 (96% over 29bp)
ATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAA70.13245033112582782RNA PCR Primer, Index 31 (96% over 29bp)
ACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA70.13245033112582782RNA PCR Primer, Index 31 (96% over 29bp)
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA70.13245033112582782RNA PCR Primer, Index 31 (96% over 29bp)
ATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAA60.11352885525070955RNA PCR Primer, Index 31 (96% over 29bp)

[FAIL]Adapter Content

Adapter graph