FastQCFastQC Report
Mon 18 Feb 2019
SRR1972919_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1972919_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000
Sequences flagged as poor quality0
Sequence length101
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGT36718.35No Hit
ATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTT27213.600000000000001RNA PCR Primer, Index 39 (95% over 23bp)
ACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCT1768.799999999999999RNA PCR Primer, Index 39 (96% over 25bp)
TCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTG1055.25RNA PCR Primer, Index 39 (96% over 30bp)
CATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCT753.75RNA PCR Primer, Index 39 (96% over 28bp)
CACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTG331.6500000000000001Illumina PCR Primer Index 11 (96% over 25bp)
TTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTC311.55No Hit
TATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCT231.15RNA PCR Primer, Index 39 (95% over 22bp)
GAGATGTGTATAAGAGACAGACACATCTCCGAGCCCACGAGACCTCTCTA211.05No Hit
CTTTACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTC170.8500000000000001RNA PCR Primer, Index 39 (95% over 21bp)
ACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGC160.8Illumina PCR Primer Index 11 (96% over 26bp)
TATCACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTT100.5RNA PCR Primer, Index 39 (95% over 23bp)
CGGAGATGTGTATAAGAGACAGACATCTCCGAGCCCACGAGACCTCTCTA90.44999999999999996No Hit
CTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTGA80.4RNA PCR Primer, Index 39 (96% over 30bp)
CTTATAACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCG60.3No Hit
CTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTC60.3No Hit
TCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTCTTCTGCTTG50.25RNA PCR Primer, Index 17 (96% over 28bp)
CTTAATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCG40.2No Hit
TTACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTT40.2Illumina PCR Primer Index 11 (95% over 22bp)
CTTATTACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCG40.2No Hit
ATACAACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCT40.2Illumina PCR Primer Index 11 (95% over 21bp)
TACCATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCT30.15RNA PCR Primer, Index 39 (96% over 25bp)
CTTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCG30.15No Hit
CTCGGAGATGTGTATAAGAGACAGATCTCCGAGCCCACGAGACCTCTCTA30.15No Hit

[WARN]Adapter Content

Adapter graph