FastQCFastQC Report
Mon 18 Feb 2019
SRR1972920_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1972920_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000
Sequences flagged as poor quality0
Sequence length101
%GC59

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGAAGTCGACGAACAACGAAGAGCGACGATGCCCGTTTCAGGTGGTCC70.35000000000000003No Hit
GTTAATAATTCTGGCAATTCGTCTCCACACTAGAAGTCGACGAACAACGA70.35000000000000003No Hit
CACTAGAAGTCGACGAACAACGAAGAGCGACGATGCCCGTTTCAGGTGGT50.25No Hit
GTGGGTGGTGGTCCCACTCTCACCTCTTTAGCCCAGGAACGTGTCTCAAC40.2No Hit
GTTTTAGAACGCGCATTCGGGAGATACAGTTAATCTAAACTCGCAGAAGT40.2No Hit
TCTCCACACTAGAAGTCGACGAACAACGAAGAGCGACGATGCCCGTTTCA40.2No Hit
CATATGCAGATCCCCTGAGACAGAGTCGCTATCGTTATGTCTCCTTCCCG30.15No Hit
TCCCAGATGTGCAAGCCGTCCTTGGTCTCCAGGCATTCCTGCGCCACGCC30.15No Hit
CTGCATATGTTTGCAGCATACTTTAGGTGGGCCTTGGCTTCCTTCCGCAG30.15No Hit
GGGTCTTGCCGTAGATGTTGCCAGAGGTTTGCTCCTTGCAGGAGCCGATG30.15No Hit
AAGGCAAGGTCGTGCAGTGTGTTGCTGATGTAAGTATACGCTATGCCTCC30.15No Hit
GATTCCATGCCTAGATGTGATACACGTTTCTGGAAACTGCCTCGTCATGC30.15No Hit
CATGGCATGTTACCCAGAGAGATTTGGGATCCTCTTCGGAGGCGTGCACA30.15No Hit
CTTTAGGTGGGCCTTGGCTTCCTTCCGCAGTCAAAACCGCGCAATTATCC30.15No Hit
ATTGCATGGCGTGCGTGGCCGAGCCTCCGCACATGTCGGGTTCGGGCTGC30.15No Hit
GGTCAACAGGCGTGCGTGACGCATACCTGCTGACCGTTAGCTTGAACCTA30.15No Hit
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATATCGTATGCCGT30.15No Hit
TCAGGGGCCATCTTCATTGCGTTTGCGTTGATTGCCCTGTTCTTCCTGTT30.15No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG30.15No Hit
GCCCTAACTGCGCAGTTAATAATTCTGGCAATTCGTCTCCACACTAGAAG30.15No Hit
GGCTGGTGATGTGGATGTGCTGCTGCTCGACAAGACCGGCACGATCACGC30.15No Hit
CTCTTGTTGTTATCGAGGTTGCAGAAACCCGCCCGGCAGCCCAGGGGTTG30.15No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC30.15No Hit
GCCTTGGCTTCCTTCCGCAGTCAAAACCGCGCAATTATCCCCGTCCTGAT30.15No Hit
GGCTTACGGTAGGTCCGAATGGCACAAAGCTTGTTCCGTTAGCTGGCATA30.15No Hit
GCCCTTAGACGTCTTGGTATACGGACAACTGATGGACCCACGTTGCGAGT30.15No Hit
CCCTCTATTCTTGGCGGAAAGGCCTTGGGTAGTCACCGGTGAATTGCATT30.15No Hit
GGATGAAGATCAGGCCGAGCCACCGCCACAGCCTTTGATTGGTTTTCATG30.15No Hit
GTCTCCCCTCGTCGGCCCAACCACGAGCACTCGTTTCCGTTACGAACCGA30.15No Hit
CTTTCAGCCTTTTGGGTCCTGTATCCCAATTCTCAGAGGTCCCGCCGTAC30.15No Hit
ATGTGATGGGGCCGCCGGGCAGCCCCGTCATGGCGGCGGCAAGTTCGCGC30.15No Hit
ACTGAAACCTCACCTACACATCTGGAGGAAGGCACGATGAAAATCCTGTT30.15No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)