+ PRJN=PRJNA257197 + RUNS=5 + READS=2000 + esearch -db sra -query PRJNA257197 + efetch -format runinfo + cat runinfo.csv + grep SRR + head -5 + cut -f 1 -d , + mkdir -p reads + cat runids.txt + parallel fastq-dump --split-files -X 2000 -outdir reads '{}' + mkdir -p fastqc + fastqc -o fastqc reads/SRR1972917_1.fastq reads/SRR1972917_2.fastq reads/SRR1972918_1.fastq reads/SRR1972918_2.fastq reads/SRR1972919_1.fastq reads/SRR1972919_2.fastq reads/SRR1972920_1.fastq reads/SRR1972920_2.fastq reads/SRR1972921_1.fastq reads/SRR1972921_2.fastq Started analysis of SRR1972917_1.fastq Approx 50% complete for SRR1972917_1.fastq Approx 100% complete for SRR1972917_1.fastq Started analysis of SRR1972917_2.fastq Approx 50% complete for SRR1972917_2.fastq Approx 100% complete for SRR1972917_2.fastq Started analysis of SRR1972918_1.fastq Approx 50% complete for SRR1972918_1.fastq Approx 100% complete for SRR1972918_1.fastq Started analysis of SRR1972918_2.fastq Approx 50% complete for SRR1972918_2.fastq Approx 100% complete for SRR1972918_2.fastq Started analysis of SRR1972919_1.fastq Approx 50% complete for SRR1972919_1.fastq Approx 100% complete for SRR1972919_1.fastq Started analysis of SRR1972919_2.fastq Approx 50% complete for SRR1972919_2.fastq Approx 100% complete for SRR1972919_2.fastq Started analysis of SRR1972920_1.fastq Approx 50% complete for SRR1972920_1.fastq Approx 100% complete for SRR1972920_1.fastq Started analysis of SRR1972920_2.fastq Approx 50% complete for SRR1972920_2.fastq Approx 100% complete for SRR1972920_2.fastq Started analysis of SRR1972921_1.fastq Approx 50% complete for SRR1972921_1.fastq Approx 100% complete for SRR1972921_1.fastq Started analysis of SRR1972921_2.fastq Approx 50% complete for SRR1972921_2.fastq Approx 100% complete for SRR1972921_2.fastq + rm -f fastqc/SRR1972917_1_fastqc.zip fastqc/SRR1972917_2_fastqc.zip fastqc/SRR1972918_1_fastqc.zip fastqc/SRR1972918_2_fastqc.zip fastqc/SRR1972919_1_fastqc.zip fastqc/SRR1972919_2_fastqc.zip fastqc/SRR1972920_1_fastqc.zip fastqc/SRR1972920_2_fastqc.zip fastqc/SRR1972921_1_fastqc.zip fastqc/SRR1972921_2_fastqc.zip