FastQCFastQC Report
Wed 26 Sep 2018
SRR1972973.trimmed_1P.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1972973.trimmed_1P.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4522
Sequences flagged as poor quality0
Sequence length2-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATTTGGCCTCTCTCCCTGCGTGATAATCAAAAAATTCACAATACAGCA70.15479876160990713No Hit
ATAATAAACTCCGCACTCTTTATAATTAAGCTTTAACGATAGGTCTGGGC60.13268465280849182No Hit
ACATATTACTGCTGCAATGAGTCTAACGCAACATAATAAACTCCGCACTC60.13268465280849182No Hit
CTGCTTGGCCGCAAGACCATGGAGGTCGAGGTGCTTCACGAGGCGCTGAC60.13268465280849182No Hit
GCTTTAATTTGTCGATTTAAAAATGGTGATAGCCTTAATCTTTGTGTAAA60.13268465280849182No Hit
CATTAAAACATAATGGGACATGGCAAGCTGAGTTTAAGAAATTACCAGAG50.11057054400707653No Hit
GAGAAGATGGGTGAACTCCCCGTAGGCCAGTGGTTCGGTAGTGATGACGT50.11057054400707653No Hit
TCTTTCCTACGCGCAAAAACTCGAGTATCTACTACCACAATATCGGAATT50.11057054400707653No Hit
GACCGCAACGGCGTCAAGATCGGTTATCTCACCTGCGATATCGGCGG50.11057054400707653No Hit
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA50.11057054400707653TruSeq Adapter, Index 11 (96% over 28bp)
CTTTATAATTAAGCTTTAACGATAGGTCTGGGCTCATATTGTTATTGATA50.11057054400707653No Hit
ATTA50.11057054400707653No Hit
GAGTTGAATGTAGGTAGAACTTTCGGAAAATTGCCTTATCCGACTCGCAA50.11057054400707653No Hit
TACTTGAATTTGCCTTTGAACCTTCTCAAGGCAAGCCTTTTCTCCTACTA50.11057054400707653No Hit
GTTGAGGATTGAAAAGGTTCGCAGCTCAGTTGTGGCTCTCAGGAACAGTT50.11057054400707653No Hit
GGTCGAGCGTTTGCGCGATATCGCCGAGATCGGGCTGGAAGAAGAGCTCA50.11057054400707653No Hit
GCCTTGGTATAGGTGAGGCACAAAATCGCGGAGGGTCGGCATCCGGCCAG50.11057054400707653No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)