FastQCFastQC Report
Wed 26 Sep 2018
SRR1972973.trimmed_1U.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1972973.trimmed_1U.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5362
Sequences flagged as poor quality0
Sequence length2-101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA1943.618052965311451TruSeq Adapter, Index 11 (96% over 28bp)
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA1071.9955240581872435TruSeq Adapter, Index 11 (96% over 28bp)
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA711.3241327862737784TruSeq Adapter, Index 11 (96% over 28bp)
ACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA641.1935844834017157RNA PCR Primer, Index 11 (96% over 28bp)
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA581.081685938082805TruSeq Adapter, Index 11 (96% over 28bp)
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAA450.8392390898918314TruSeq Adapter, Index 11 (96% over 28bp)
ACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA400.7459903021260723RNA PCR Primer, Index 11 (96% over 28bp)
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAA270.5035434539350988TruSeq Adapter, Index 11 (96% over 28bp)
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAA140.26109660574412535TruSeq Adapter, Index 11 (96% over 28bp)
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAA110.20514733308466987TruSeq Adapter, Index 11 (96% over 28bp)
GTATCTAGTGGGAGAAACATTAAGAGAACACTTGCTGCCATGCCGGAAGA110.20514733308466987No Hit
GTATCAAACGGACCCAAAAACATCAGTGGTCAGAGTCCGGCGCGAACTTC100.18649757553151808No Hit
CACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA100.18649757553151808TruSeq Adapter, Index 11 (96% over 28bp)
GCTGAAAAGAAGCCCACCTACAACGAACATTACTTTGAGCACCCTCACAA100.18649757553151808No Hit
GAGATGTGTATAAGAGACAGACACATCTCCGAGCCCACGAGACCGTACTA90.1678478179783663No Hit
GTACCAAACGTGTACCGGAACAATTTTTAGAGCAAGAAAACTTTTCTATT90.1678478179783663No Hit
GTATTCAAAGAAGCGGTTCAAGGGCATACACACATTGTTTCTGTTTCTAC90.1678478179783663No Hit
CTTTATAATTAAGCTTTAACGATAGGTCTGGGCTCATATTGTTATTGATA90.1678478179783663No Hit
ACTTGATACACTGGGATGACTCTTTGCCGAACAATCCCCTGTTGAACGGA90.1678478179783663No Hit
ACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAA80.14919806042521447RNA PCR Primer, Index 11 (96% over 28bp)
GTGATAAAGGAGGCAGTTTTGAAGCTGCACTATGGCAACAATGGGACCGA80.14919806042521447No Hit
GTTAGAAAGTTTAACTGATAGGGAATTACTCCTACTAATCGCCCGTAAGA80.14919806042521447No Hit
ACATTGGGTTGGACCCGGTGGCTCCAGGAGACCTCACCATGGTAATCACA80.14919806042521447No Hit
GTTCAAAGGCAAATTCAAGTACATGCAGAGCAAGGACTGATACAATATCC80.14919806042521447No Hit
GCCAGAAACTCTGGTCCACAAGCTGACCGGTAAGAAGGTGACTTCCAAAA80.14919806042521447No Hit
ATGTTGGAGAACAGTATCAACAGCTCAGAGAGGCAGCCACTGAGGCTGAG80.14919806042521447No Hit
CCCATGTATGATTGAGCAATTCAAAGTGGTTTGGCTGAAACCCTACGAAC80.14919806042521447No Hit
GAAGGCCACGTGGTGCGCGCGCTGCATGACTTTCCCGACTTTCCCGGCTT80.14919806042521447No Hit
ACAATGGATTATTGAGCAGTATTGAAATTGGAACTCAAAATCATACAATC80.14919806042521447No Hit
CTCTTCAACTGGATCAAGCACAAACAACAGTGATGGTCATATTAAGAGAA80.14919806042521447No Hit
ATCCAGGATTATGCTACGCATCCCAAATGCAACAAACGAAGCCAAACCCG70.13054830287206268No Hit
GAACAATCCCCTGTTGAACGGACAGACCTGCTGTCAAGATCTTGTGGTAA70.13054830287206268No Hit
AAACAAAAACCACACAAATATACCAAAGCTATATCTGGTAGCCTTCTATG70.13054830287206268No Hit
TCTAAGTACAGACATTGCTCTTCTAATTAAGAAAAAATCGGCGATGAAGA70.13054830287206268No Hit
GTTTTGAGGAGGTAGTACAAACATTGGCTTCATTGGCTACTGTTGTGCAA70.13054830287206268No Hit
ATAGAGAACAACCTAGGTCTCCGGAGGGGGCAAGGGCATCAGTGTGCTCA70.13054830287206268No Hit
GTTATATGCATGTCAGTGATTATTATAATCCACCGCATAACCTCACACTG70.13054830287206268No Hit
ACAGCACCTAGGTTGAAGATCATCCAGAACCAGCTGATGTACTTGCCCTT60.11189854531891084No Hit
CCAGGTCTAGTGAGTGGTATCTTTGTCTGACGAACTTCTTATCAACTACA60.11189854531891084No Hit
CAATCAAAGACTGGTCAATTAACTGGTCCTGTATCCCTGCTGCAAGGATG60.11189854531891084No Hit
AGCTACTGAGTCCAGTATAGAGTCAGAAATAGTATCAGGAATGACTACTC60.11189854531891084No Hit
CCTTACTATTGATTCAGAAATACCAAGTTAAGACCTTATTCTTCAACACG60.11189854531891084No Hit
CCCAAGGACTCGCGCTTAGCAAATCCAACGGCTGATGATTTCCAGCAAGA60.11189854531891084No Hit
ATAAAAGGTGCTGTAAACTCATACCTAAATGCAAGATTGTATTTCTCTAA60.11189854531891084No Hit
AAATATAACTGCACCCAAGGACTCGCGCTTAGCAAATCCAACGGCTGATG60.11189854531891084No Hit
GTGTTCTCTTGTGGAATTGTCGTTCTTTTTATTTCATGGCTCATTTGCAG60.11189854531891084No Hit
CTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA60.11189854531891084TruSeq Adapter, Index 11 (96% over 28bp)
GCTTTAACCCAAATAACTTGCACAGTTGATTTAGCACAGATCCTGAGGGA60.11189854531891084No Hit
ATCTAGGCCTTATCACATCACAAGTTCCGCCTTAAACTCTGCAGGGTGAT60.11189854531891084No Hit
GCCGTAAGTATTACCTGCTTACAACTGAGATGGTTTTGGTGTGGCATCTT60.11189854531891084No Hit
GTGTACAGACCACTTTAGCTCAGAGACACTTTTGTGGCGTATCTCAGGGG60.11189854531891084No Hit
CCATAGAGGATTCCAAATTAAGGGCATTGTTAACTCTATGTGCTGTGATG60.11189854531891084No Hit
CTCCAACAATATGCGGAGTCTCGTGAACTTGACCATCTTGGACTTGATGA60.11189854531891084No Hit
GTGATAATATCCTGGCGGAGGCTTTAACCCAAATAACTTGCACAGTTGAT60.11189854531891084No Hit
GGACTGAATCTCGAGGGGAATGGAGTGGCAACTGACGTGCCATCTGTGAC60.11189854531891084No Hit
ATCCACAATAGTACATTACAGGTTAGTGATGTCGACAAACTAGTTTGTCG60.11189854531891084No Hit
AATATGCGGAGTCTCGTGAACTTGACCATCTTGGACTTGATGATCAGGAA60.11189854531891084No Hit
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAA60.11189854531891084TruSeq Adapter, Index 11 (96% over 28bp)
CAGTATCAACAGCTCAGAGAGGCAGCCACTGAGGCTGAGAAGCAACTCCA60.11189854531891084No Hit
GCATTATACAATCCCACAGTGTTATATGCATGTCAGTGATTATTATAATC60.11189854531891084No Hit
AATGTAGGTAGAACTTTCGGAAAATTGCCTTATCCGACTCGCAATGTTCA60.11189854531891084No Hit
ACTGGAGGAGCAGGCACAGAAACAGCAACCGAAAAGACTTGACAAGAAAC60.11189854531891084No Hit
CTGCTATTAGTTGCCTCTTTCGGAGGGAAAAGAGATTGGCTCAAATTTTG60.11189854531891084No Hit
GTACTTTCTCTAATGATGGAAAACCAAGGCGGATATAGCTTAAATGTAAA60.11189854531891084No Hit
GGTCTTAACTTGGTATTTCTGAATCAATAGTAAGGCACCAGCACCTTCTC60.11189854531891084No Hit
GGCCTAACAAGATGACAACTAGAACAAAGGGCAGGGGCCATACTGTGGCC60.11189854531891084No Hit
CTCTTTGTCCTTATCCTCAAATTGCCTACATGCTTACATCTGAGGACAGC60.11189854531891084No Hit

[OK]Adapter Content

Adapter graph