FastQCFastQC Report
Wed 26 Sep 2018
SRR1972973.trimmed_2P.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1972973.trimmed_2P.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4522
Sequences flagged as poor quality0
Sequence length2-101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATT160.35382574082264484No Hit
ATTTT160.35382574082264484No Hit
TTT150.33171163202122955No Hit
TTA100.22114108801415305No Hit
TTATT90.19902697921273774No Hit
GAATA90.19902697921273774No Hit
ATTTA90.19902697921273774No Hit
GTAT80.17691287041132242No Hit
ATAT80.17691287041132242No Hit
TTAT80.17691287041132242No Hit
TCTT80.17691287041132242No Hit
ATTAT70.15479876160990713No Hit
ATTT70.15479876160990713No Hit
TCAT70.15479876160990713No Hit
TTTT70.15479876160990713No Hit
GTATT70.15479876160990713No Hit
GTCAAGGAAGGAAAGCTGCAGTGTCGCATCTGACAACCCTTGCCACAGTC70.15479876160990713No Hit
ATA70.15479876160990713No Hit
ATT70.15479876160990713No Hit
TGGTTGCAGGAAGCTGCCGAATCGCGATGCGGCCAGCGATCTCGGCATTG60.13268465280849182No Hit
AATTT60.13268465280849182No Hit
GTTG60.13268465280849182No Hit
GTTT60.13268465280849182No Hit
GTTA60.13268465280849182No Hit
TTTAT60.13268465280849182No Hit
GTA60.13268465280849182No Hit
CTAG60.13268465280849182No Hit
GTTTT60.13268465280849182No Hit
GTGTTGGTGTTCTCTGCTTTTAAGGGTCCGGCTGCGGTCGT50.11057054400707653No Hit
GAATT50.11057054400707653No Hit
TTTTTA50.11057054400707653No Hit
TTTCTA50.11057054400707653No Hit
ACTCAAGTTGGACAACATCACCGTAGAGCAGACAACGACAGCACAGCCTC50.11057054400707653No Hit
GTGTATAATGTAAGGACTCCTTTCGTTATCTAAATAGTTATTTATTGAAA50.11057054400707653No Hit
TTTA50.11057054400707653No Hit
GTC50.11057054400707653No Hit
ATATTA50.11057054400707653No Hit
AGA50.11057054400707653No Hit
CACCGGGCGCGCTTGCCGATTAGTTCATGGCCGTGAGCGTCACGGACGTA50.11057054400707653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)