FastQCFastQC Report
Wed 26 Sep 2018
SRR1972973.trimmed_2U.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1972973.trimmed_2U.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93
Sequences flagged as poor quality0
Sequence length3-101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTATAATTAAGCTTTAACGATAGGTCTGGGCTCATATTGTTATTGATA22.1505376344086025No Hit
GGGCTCATATTGTTATTGATATAGTAATGTTGTATCAATATCTTGCCAGA22.1505376344086025No Hit
CAGTTAGAGGGAGTAGCTTTGTAACTGATTTAGAGAAATACAATCTTGCA11.0752688172043012No Hit
ATCCTTAGCTCGCCAGGCATCTCGAGGGTAACAGCAAGACCGAACGTAACCATTTCGTCGACGGCGCCGGCGGGA11.0752688172043012No Hit
GGGTTAAGAACATTGGTTCCTCAATCAGATAATGAGGAAGCTTCAACCAA11.0752688172043012No Hit
GTATGAGATGTGTACAGACCACTTTAGCTCAGAGACACTTTTGTGGCGTA11.0752688172043012No Hit
GCCCCGTTTTTTTGCCACTGGGTATTTAATTAAGCCAATAACGTCAAGTG11.0752688172043012No Hit
CGACATCTTGCGATAGCGGTCTTCCATTTCGCGCACGGCCCATTTCAGCG11.0752688172043012No Hit
CATCGCCCCGGGCGACATGCACCTGTCACTGGGCCGCAGCGGCGCCAACT11.0752688172043012No Hit
ATCTCAAGGGACACGCCAATTAACGTCATCCAATGAGTCACAAACCCAAG11.0752688172043012No Hit
CTCTTTGTCCTTATCCTCAAATTGCCTACATGCTTACATCTGAGGACAGC11.0752688172043012No Hit
GCCTTAATCTTTGTGTAAAATAAGAGATTAGGTGTAATAACTTTAACATT11.0752688172043012No Hit
TACCGAGGGTATGTTATGGCTAAATGATAATCTAGCCCCGTTTTTTGCCA11.0752688172043012No Hit
ATTCAAG11.0752688172043012No Hit
TCCCTGTTCTTTTGCCAAAGTACATTGGGTTGGACCCGGTGGCTCCAGGA11.0752688172043012No Hit
TCTTAGTTCAAACCTTATATTTACATAGAATGCAGGATTCTGAAGTTAAG11.0752688172043012No Hit
GTTGTTCACAATCTAAGTACAGACATTGCTCTTCTAATTAAGAAAAAATC11.0752688172043012No Hit
AATATATGTTTTTCATTCGAGTTTTTCTTTATATTATCTAAATGTCCCTC11.0752688172043012No Hit
ACATAATAAACTCCGCACTCTTTATAATTAAGCTTTAACGATAGGTCTGG11.0752688172043012No Hit
ATAAATACCCATATATATTATGGTTCCAAAGACAAAGTGATTAATATTTA11.0752688172043012No Hit
CGGCAATTGAGATCCGTCATTGATACCACAGTTTATTGTAGGTTTACCGG11.0752688172043012No Hit
ATTTA11.0752688172043012No Hit
GTCCCAAAATTACCTTGTTGACACTGATCAAGACGGCAGAACACTGGGCG11.0752688172043012No Hit
GGCTGTGGTAAGCACAGAACCAATGGGTATTTTGAAACTTGCCCCCAGTC11.0752688172043012No Hit
CAATTCTTTTTTGTTGTTAAAGAACTATTGCCTAGCTCACAGCTCACAGC11.0752688172043012No Hit
GACC11.0752688172043012No Hit
TAACAATATGAGCCCAGACCTATCGTTAAAGCTTAATTATAAAGAGTGCG11.0752688172043012No Hit
CCCTCAAAGTGTTAGGGAGGCATTCAACAATCTAGACAGTACCACTTCAC11.0752688172043012No Hit
ATCTAAGTACAGACATTGCTCTTCTAATTAAGAAAAAATCGGCGATGAAG11.0752688172043012No Hit
GTGATACCGAGGGTATGTTATGGCTAAATGATAATCTAGCCCCGTTTTTT11.0752688172043012No Hit
TTATAAAAGACAGAGCTACTGCAGTAGAAAGGACATGCTGGGATGCAGTA11.0752688172043012No Hit
CTTATCATACAGGCCTTTGAAGCTGGTGTTGATTTTCAAGAGAGTGCGGA11.0752688172043012No Hit
CACCAGTATTACCACTGACTGGCTCAGCTACCTTCCTGCGTCACCCCATC11.0752688172043012No Hit
ATTTTTAGA11.0752688172043012No Hit
CAGTATCAC11.0752688172043012No Hit
GATTATTTATGTACCAAAAAAAGGTACATATATAATTTCTCTTTTACATT11.0752688172043012No Hit
TTACTTAACTACCCAAATTCATAATCTACCACATCGCTCATTGCGAATAC11.0752688172043012No Hit
GCTATACGGAGCATGATTATCGCGAGAGACTGGATTTCGAGCTCGGCGTC11.0752688172043012No Hit
GGGCCGCACTGCGTGCGCAGGCGGGCCGTTACGGCAATTGGCTGTCGCAGC11.0752688172043012No Hit
CATAATATACCTGTTTTTAAAAGATTGATTGATGAAAGATCATGACTAAT11.0752688172043012No Hit
ATCCGAATTCCACTATTGAATCACCGCTGTGGGCACTGAGAGTCATCCTTGCAGCA11.0752688172043012No Hit
GCTTGGAGTTATCCACAATAGTACATTACAGGTTAGTGATGTACTATTGT11.0752688172043012No Hit
ATGATGGTAGTTACGGAACGTGAACAAAAAGAAAGCTTATTGCATCAAGC11.0752688172043012No Hit
TGATTAGTGTGTGCAATAGGTTCTATCATATTAGAGATTGTAATTGTGAA11.0752688172043012No Hit
AAGTTGTTCACAATCTAAGTACAGACATTGCTCTTCTAATTAAGAAAAAA11.0752688172043012No Hit
ACAATCCCCTGCTCATTCCCCAGGAAATGCTGGTGGGCCAGACTGCTGCT11.0752688172043012No Hit
GCCCGGCACCATCACTGCACCGGCCGAGGTGGCGGCGAGGATCAGCTTCT11.0752688172043012No Hit
CTCGTCGTCACTGTGAGCCAAGAGATGACGGACGAAGTTCGATCCGATGA11.0752688172043012No Hit
TCCGCACTCTTTATAATTAAGCTTTAACGATAGGTCTGGGCTCATATTGT11.0752688172043012No Hit
ATAT11.0752688172043012No Hit
CCATACCGCGCTTGAGCTCCATCACCTCGGCCTCGAGAATACGATTGCGC11.0752688172043012No Hit
CTATGGCAACAATGGGACCGACAATCCCTAATTATGTTTATCACTGCATT11.0752688172043012No Hit
GTATGTTGATAACCAACCTTTACAAGTATCAAAATACTATGCACGGTTAT11.0752688172043012No Hit
ATATTAGAGATTGTAATTGTGAAGAACGTTTCTTAGTTCAAACCTTATAT11.0752688172043012No Hit
ATGTGTGACATATTACTGCTGCAATGAGTCTAACGCAACATAATAAACTC11.0752688172043012No Hit
TAATTACCCAAAGAAAGAATGATGTCCTCTTGAATCGATCACGAGGTAAC11.0752688172043012No Hit
TGTTTACACATGTAAGAGTACAGCCAGCAATTTCTTCCATGCGTCATTGGCGTACTGGAGGAG11.0752688172043012No Hit
TGCCAGCCCTGCGCGGTTTCCTCGCCCTGCTCAGCAACGTC11.0752688172043012No Hit
CATACATCATCTTGATCTGATTTCAATAAATAACTATTTAGATAACGAAA11.0752688172043012No Hit
TCTTTCCTACGCGCAAAAACTCGAGTATCTACTACCACAATATCGGAATT11.0752688172043012No Hit
TCTAACATTCCACTTGCTTATAACTGTATGGACGTAACCTCCAGGCAAAG11.0752688172043012No Hit
TCTTA11.0752688172043012No Hit
AGATAAAAATGATTCTGCCTACCATTACTCTATTCCCAACACCTGGTTCG11.0752688172043012No Hit
CAATAAGCTTAACTTCAGAATCCTGCATTCTATGTAAATATAAGGTTTGA11.0752688172043012No Hit
TGTCTTTTCTTTTAATTTTATCATTCTGAATGGAATAGTAGCTTACTAGAC11.0752688172043012No Hit
CTCGAACTAACATGGGTTTTCTGGTGGAGCTCCAAGAACCCGACAAATCG11.0752688172043012No Hit
GTCGTGAACTACAATGGATTATTGAGCAGTATTGAAATTGGAACTCAAAA11.0752688172043012No Hit
GTTATAAATTATGCAGTTGCACTGTTCGATATTAAATTTAGAAACACTGA11.0752688172043012No Hit
TGTCAAGACCAGGTAAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGA11.0752688172043012No Hit
CCGCACATGCCGCGAAAGACCGGACACCGTGTAGTGCCCGGCGGCAATGG11.0752688172043012No Hit
GTACTATTGTGGATAACTCCAAGCGGGATGGAAAATGTTCTTTGGAAAAG11.0752688172043012No Hit
GTGTAGCCATTTAATATCAAGAGGAAGAATGTCAACTGCTTCATCTAAAA11.0752688172043012No Hit
TTCTTAAACTTTATTGAGCTTGTTTTTGCTTTTGACGAAATTTAGATATC11.0752688172043012No Hit
CCCTTGAATAGTTTGACTAACTAAGAAGTTACAGAGGTCGCTTAAGACAA11.0752688172043012No Hit
GCATTAGTTCACAGTCAAACAAGCAAAATTGAGAATTAACTTTGATTTTG11.0752688172043012No Hit
CCCTCTAACTGTGGCATGCTCACCGAAATCATCACTTGTGTGGTGCCATG11.0752688172043012No Hit
GTTAAAGAACTATTGCCTAGCTCACAGCTCACAGCTCACGAAAAAGGTGA11.0752688172043012No Hit
TCTCTTGCTGCATTTCCTGCTAATTCTAAAATTTCTGCACATAAAATTAG11.0752688172043012No Hit
TTAATAATGAGTAAATCTATTATTCAAGAGCGTATCAGTCAATTACGTCA11.0752688172043012No Hit
CTACTCCTAGGATGCTTCTACCTGTTATGTCAAAATTCCATAATGACCAA11.0752688172043012No Hit
CACAAAGCATTGGTAAAAAAGTCAATAGAAAGGCTTTTTTCCTTTTTCAT11.0752688172043012No Hit
GTTAGGGAGGCATTCAACAATCTAGACAGTACCACTTCACTAACTGAGGA11.0752688172043012No Hit
ATCGATGTCGTTGTCCTGTCAGATCAATATCAACAAGGCGCGACAGTTAC11.0752688172043012No Hit
CCTGTTCTCCTCCTTGTTTACCGTGAATTTTCCCAAATCAAAGCCAAGGG11.0752688172043012No Hit
CAGCAGGTCTGTCCGTTCAACAGGGGATTGTTCGGCAAAGAGTCATCCCA11.0752688172043012No Hit
ATG11.0752688172043012No Hit
GTC11.0752688172043012No Hit
ATATATATTACTAACTCCCTA11.0752688172043012No Hit
CTGCTCAACCCAATCGCCTATGACGGCCAGACGGGCGTCAACACCGATGG11.0752688172043012No Hit
GCATAATCCTGGATTGTTCTCAATATCACAGAAGATGTCGTTTACAGGAA11.0752688172043012No Hit
GCCGTGGTGCACTGCGCAGGTGCGGTGGGCGTGTGGGGCGACTATGCGCA11.0752688172043012No Hit

[OK]Adapter Content

Adapter graph