FastQCFastQC Report
Wed 30 Sep 2020
bad1.fq

Summary

[OK]Basic Statistics

MeasureValue
Filenamebad1.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184
Sequences flagged as poor quality0
Sequence length4-166
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAAAAGAAGAGATTGTTTTCGGCATAAATGTAGTTGGCAACGATGGAG21.0869565217391304No Hit
CGGAAATACGGGCGCGTGACATCGCTGCAAAGACGCGCGCCGCCATGCCG10.5434782608695652No Hit
TCCTGATTTTGCAGGTAGTTCTTACCCAACCAGTCGGCAACGCGCTGGGCGG10.5434782608695652No Hit
TTCCAGCTCATTCACCCTGGCATCGACCGCGTGCAGAAACTCCTGCTTAT10.5434782608695652No Hit
AACATATCGACTTACGTGTCTGCGGTGTTGCCAACTCGAAGGCTCTGCTC10.5434782608695652No Hit
TAATACGCC10.5434782608695652No Hit
GTTGCTCTGCTGTTTCGCCCAGGCGACAGCATCATCAATCAACTTACGGT10.5434782608695652No Hit
CGATAGTACGGTTGCCAGTGCCTTTGTCCAGACCGTAAGCCAGCGCAGCTGCGGTCGG10.5434782608695652No Hit
AGCTTGTTGGTGATGATATCTCCCCAGAATTGATACAGATCTTTCCCTCG10.5434782608695652No Hit
CGTTTGATGATGAAGAACTGAAAGTGGCGCTAGGGTTAAACTCGGCTAAC10.5434782608695652No Hit
TGCCTTCCCGGCTCCGGTCGCCAATGTTGAAAGCGATGTCGGTTGTCTGGAATTGTTCCACGG10.5434782608695652No Hit
ATACCGGAGCGGCAGTGGCTCATGCTTTCTACGGTTTACCGAATGTGAAA10.5434782608695652No Hit
AATGCACCATCAACAGGTGTCACCGCCGCCCCGAGCACATCAAACCCGACGCTCATATTGGCACTGGAAGCC10.5434782608695652No Hit
CGGCAATAAGAGGGATATGCATGCCAGATTTTTTCTCCTTCATTAACAGCGTCCTTTGG10.5434782608695652No Hit
ATTTTTGAGAGTGCTTTTGGCTGGCAGGAAGCGGCAGG10.5434782608695652No Hit
GTCAGAATGGTCACTGGCTTATCACCCGCAATATGGGTCAGCATTTGTGC10.5434782608695652No Hit
TATTTTTGCCGAACTTTTGACGGGACTCGCCGCCGCCCAGCCGGGG10.5434782608695652No Hit
AGAATCGCTTCCACGCTCTCTTTAAATTTCGCCGGATGCGCGGTGCCGAG10.5434782608695652No Hit
AGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAG10.5434782608695652No Hit
GCAG10.5434782608695652No Hit
CTCGCAACAATCGGCGCGTAAACAGGCAGCCAGCACCGCAGC10.5434782608695652No Hit
CCGGTGCGATGGTCAGACGGTCGCAGCCTGCCAGTTCCAGAATTTCGCCG10.5434782608695652No Hit
ACGGCTGATGTTAA10.5434782608695652No Hit
TGAATCCCACTAATTGTTTTGAGATCCCCCCGCTCGGGG10.5434782608695652No Hit
GATGATATTCTTTCACGAGGCGAATTAAGCGCCCGAGATT10.5434782608695652No Hit
TACTGAACG10.5434782608695652No Hit
TTGTCGCCATTGCTCAGGGATCTTCTGAACGCTCAATCTCTGTCG10.5434782608695652No Hit
ATTACTCGATGAGAACGGCGGTTGTTATT10.5434782608695652No Hit
GCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAGTGG10.5434782608695652No Hit
GACGCCATGAAGACCGCGAGTGATTGCCAGCAGAGTAAAGACAGCGAGAATAATGCC10.5434782608695652No Hit
CATCGCTTTCAACATTGGCGACCGGAGCCGGGAAGGCAAACGCCGCGCGC10.5434782608695652No Hit
GCCCTGCTGGCGATCGGTAACATTGCCGGTAACGCCGCAATCATCCACTTTGCCGGCTG10.5434782608695652No Hit
TGACAAAATCC10.5434782608695652No Hit
GTCTTGTCGGCGGTTGCGCTGAC10.5434782608695652No Hit
GGTGTAGACATCACCTTTAAACGCCAGAATCGCCTGGCGGGC10.5434782608695652No Hit
AGAGA10.5434782608695652No Hit
CCAGCACCCACAGCCACTCATCAAACCCTGGCACTTGCTGGCTGATGATGTC10.5434782608695652No Hit
TTAGTTTGTTGGGGCAGTGCCCGGATAGCATCAACGCTGCGCT10.5434782608695652No Hit
TGCCGACCATGGCGATTTACAGTTAAGCGGTGCATCGGTTTATTTCAAAG10.5434782608695652No Hit
TTTTCTTCATTTTTTTCAGCACTTCAGCAGAAATCTGCGGCGG10.5434782608695652No Hit
ATGAGTCGTTTCATTATTGAAAATCGGCTGACCAAACCAGAGCAACTGAC10.5434782608695652No Hit
CGGAGAATTACAGCATTTTGGTGGCGATAGTATCGCCAACAAACTGCGCG10.5434782608695652No Hit
GTGCCGCACCTACAGGGCCTCCCAGCCCCGCGCCGCGCAGCAAACCA10.5434782608695652No Hit
CAGACCGAGTGACTTCGCCAGCAGACCCGCCGTCAAATCGCCGAAGTTTCCGC10.5434782608695652No Hit
CTTCAGCGGTTTTCTTCATTTTTTTCAGCACTTCAGCAGAAATCTGCGGCGGTGCCATTTTCT10.5434782608695652No Hit
ATTGCTGAGTCCACCCGCCGTATTGCGGCAAGCCGCATTCCGGCTGATCACATGG10.5434782608695652No Hit
CGACGCCAATCACAAACACTTCGATAACCTGATCGGTATTGAACAGCATC10.5434782608695652No Hit
GCTAAGAAAGCACGCGGTCTGATGAGTC10.5434782608695652No Hit
GCAGATATCATAAT10.5434782608695652No Hit
TGGTCATCTGTACGGCAAGCGCCATGCTGATATTACTGGCGG10.5434782608695652No Hit
AAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCC10.5434782608695652No Hit
ATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCT10.5434782608695652No Hit
CATTGTCGCCATTGCTCAGGGATCTTCTGAACGCTCAATCTCTGTCGTGG10.5434782608695652No Hit
TTCACGAGCGAGAATCAATAGTTTACGCGCCACATCCATACCAGAAAGATCATCTCGCGGGTCCGG10.5434782608695652No Hit
TTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAAT10.5434782608695652No Hit
TGGAAGTGCAGTCAACAATGACCGGGTTCAGCAGATGATATTCTTTCACG10.5434782608695652No Hit
GTGCGCGTTACTCATCAGATGCTGTTCAATACCGATCAGGTTATCGAAGTGTT10.5434782608695652No Hit
TTCTATAGCCACTATTATCAGCCGCTGCCGTTGGTACTGCGCGGATATGG10.5434782608695652No Hit
GGGGGAAAATCAAAAGAAAAACTCAGGGCGCGGGCAACGGCGTTCGCTTG10.5434782608695652No Hit
CTACAATCTGAAAGATCACAACGAGCAGGTCAGCTTTGCGCAAGCCGTAACCCAGGG10.5434782608695652No Hit
ATTTTTTGTGGCTTCTATATTCTGGCGTTAGTCGTCGCCGATAATTTTCAGCGT10.5434782608695652No Hit
CTCCAGTGCCTGTTCGGTGGTCGCGGCGCTGATGGCGATGAATGAACACT10.5434782608695652No Hit
CGCTGCCGCTGCCGCGTTTGGCGTCGAACCCATTCCCGCCTCATTGGAAAACATACTGCGCTG10.5434782608695652No Hit
TTCCAGTTTTTCCTGGTCAATAGCAAACTTACGGATACCTTCCGCCAGTT10.5434782608695652No Hit
GCTGCATTAAATCGAGCGGGCGGAGTACGCCATACAAGCCG10.5434782608695652No Hit
GGTAATAGCCAGCGCAACGCCGGCCAGGTTGCCGCTACCCACGCGCGCCG10.5434782608695652No Hit
ATCAATTCTGGGGAGATATCATCACCAACAAGCTGAACGAGGCGCTCGCAGCACAAGGCGATAATGT10.5434782608695652No Hit
TTCCAGTAACTGTTGCTCAATTTCAAACGTAGACATCTCTTTGTCGGCTT10.5434782608695652No Hit
CGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAA10.5434782608695652No Hit
CAGCGGCGTTTATCAGGATAAAGGCATCCCTGCGCTGGAAGA10.5434782608695652No Hit
TTTTTCGCCGTCAACTTCGTCGATTTCGATAATAGAAATATCGAAAGTAC10.5434782608695652No Hit
CCAGGCATCTCGCGGTCCGCTACTGCCAGCGTCGCATCGGGCGTTACGTC10.5434782608695652No Hit
CTCGTCG10.5434782608695652No Hit
TATTTTTA10.5434782608695652No Hit
TACCACGACAGAGATTGAGCGTTCAGAAGATCCCTGAGCAATGGCGACAA10.5434782608695652No Hit
ATTACCAATT10.5434782608695652No Hit
CACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCT10.5434782608695652No Hit
CCGTTGGTTGCCAGAACTTCGAAGGTTTTTTCGCCGTCAACTTCGTC10.5434782608695652No Hit
GAACTGGGCGATGGGGGTAATGGTGCGGGGGTGAAGAACTTTAGCGCCG10.5434782608695652No Hit
TTTGGACGGAC10.5434782608695652No Hit
TGTTTCGCAGGAGTAATCACAACTATCGATCAACTCATTCTCATTTTTTG10.5434782608695652No Hit
AAGCCGGTGTAGACATCACCTTTAAACGCCAGAATCGCCTGGCGGGCATT10.5434782608695652No Hit
AGTTTGTCGCTGATGCGCATCAGCGTGCTAATCTGCGGAGGCGTCAGTTT10.5434782608695652No Hit
CATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCC10.5434782608695652No Hit
AGCACCATGTGATCAGCCGGAATGCGGCTTGCCGCAATACGGCGG10.5434782608695652No Hit
AGAACCACGGGAAAATATCGTTTATCAGTGCTGGGAGCGTTTTTGCCAGG10.5434782608695652No Hit
GGCAGGTTTCACCGCCGGTAATGAAAAAGGCGAACTGG10.5434782608695652No Hit
GCATGGCGCTTGCCGTACAGATGACCAGGGTGTCGATAAAAATGCCAATC10.5434782608695652No Hit
GGTTTGATGAGTGGCTGTGGGTGCTGGCGTATCCGGGGATTAAAGTCTCG10.5434782608695652No Hit
TGAAGCTGTTGCGCAGCTGCCGCAGGAGACGCGCAACCAGCTGGTTGTCT10.5434782608695652No Hit
TTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTC10.5434782608695652No Hit
AAGAAAGCACGCGGTCTGATGAGTCGTTTCATTATTGAAAATCGGCTGACCAAACCAGAGC10.5434782608695652No Hit
TGGTGCCATCCATAATCGCTACACAAGAGTTGGTAGTACCCAGGTCGATA10.5434782608695652No Hit
TGATTGGCATTTTTATCGACACCCTGGTCATCTGTACGGCAAGCGCCATGCTGATATTACTGGCGG10.5434782608695652No Hit
CGATGGGT10.5434782608695652No Hit
AATGAATGCTGCCGGAGATACGGCCTTCCAGCTCGCCCATCAAAGCCAGCAAACGAG10.5434782608695652No Hit
AAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTATTTTTGCCGAACTTTTGAC10.5434782608695652No Hit
TTAGGATTGCGGAGAATAACAACCGCC10.5434782608695652No Hit
GGCATCGACCGCGTGCAGAAACTCCTGCTTATGTTCCTCGTCCATTTTCTTCCAGGTATTA10.5434782608695652No Hit
CGTTGGTCGCAGCAATAAAACGTTTCACCGGCAGACCGAGTGACTTCGCCAGCAGACCCGCCGTCAAATCGCCG10.5434782608695652No Hit
TCAGATACAGAAACCACGCCCGGATCTTCTGCCGGAGCGTACTCTTTCTTATCGGTAT10.5434782608695652No Hit
CCTTGACCGGTAATTCGTCTTCATCACGGCTGGCACCAATGAGCGTACCTGG10.5434782608695652No Hit
GCGCTGCTGGAGCAACTGAAGCGTCAGCAAAGCTGGCTGAAGAATAAACA10.5434782608695652No Hit
GAATACCGATAAGAAAGAGT10.5434782608695652No Hit
TGCCAGAGAACATTCGGCAAACGAGGTCGCCATGCCGATAAACGCGGCAACCCACATCCAAAA10.5434782608695652No Hit
ACTCGGTCTGCCG10.5434782608695652No Hit
TACCCCCATCGCCCAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAA10.5434782608695652No Hit
CCGCGAAGCTGATGAAAGATGTTATCGCTGAACCCTACCGTGAACGG10.5434782608695652No Hit
AGTCATTGTGTACCAGTCTTGCGGCGCGCGTGGGTAGCGGCAACCTGGCC10.5434782608695652No Hit
GACTTCAACAACCTCGCATCGGGCACCTGACGCGGGTCGCAGG10.5434782608695652No Hit
GATATTGAAATTGAACCTGTGCTGCCCGCAGAGTTTAACGCCGAGGG10.5434782608695652No Hit
AAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAG10.5434782608695652No Hit
CGCCAGTTTATCTACTGCCATTGGATCCTGGTTGTGCTGCCACAGGAACTCGGACTCAGTGATACGCGCCGGACG10.5434782608695652No Hit
GGCGGCGGTCCGTGTAGGTGCCAGCGATTGCCTCGCCATTCATAATGTTG10.5434782608695652No Hit
TTACCAAAGCCCGTTGCC10.5434782608695652No Hit
TAACCCCATTTAGTGCCGCACCTACAGGGCCTCCCAGCCCCGCGCCGCGC10.5434782608695652No Hit
GATGACCCTGGAAAAGAATATGCCGATCGGTTCGGGCTTAGGCTCCAGTG10.5434782608695652No Hit
AGCCAGCAAGTGCCAGGGTTTGATGAGTGGCTGTGGGTGCTGGCGTATCC10.5434782608695652No Hit
GGTGGCGTTGGCGGTGCGCTGCTGGAGCAACTGAAGCGTCAGCAAAGCTGGCTGAAGAATA10.5434782608695652No Hit
CCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTA10.5434782608695652No Hit
GCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGG10.5434782608695652No Hit
CCAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCAC10.5434782608695652No Hit
ATCAGCTTCGCGGCAAGCTCAGGCTGACGGGAATAGCAGGCGTGAATGAAGCCTGCCAGATGTCG10.5434782608695652No Hit
TTCAGCGAAGACGATTTCGATTTTGCCCAACAGCATTTGCGAATGCTTTCCGGCTTGTA10.5434782608695652No Hit
TACTTTACGTATTGGCTTAGTTTCCATCTCTGATCGCGCATCCAGCGGCG10.5434782608695652No Hit
GGCGCTAACCACGCCGTTTGAACTGGAAACCCGCTTAATCCCCGATGAGC10.5434782608695652No Hit
GCACGCGTTCTGCAATTCGTTTTCTTTAGCCTGACCGTGCTGTTTGCCCT10.5434782608695652No Hit
TGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTC10.5434782608695652No Hit
ACACTCGTTTGCTGGCTTTGATGGGCGAGCTGGAAGGCCGTATCTCCGGC10.5434782608695652No Hit
CCCGGAACCAGTTTCAGGATTTCCAGACCAATATTTACTGCCAGTTTGTC10.5434782608695652No Hit
TTACGATTTCCGCCAGCCTGGCGATTAGCCTGATGCTGTGCTGCACGGCG10.5434782608695652No Hit
TTTTATTTGGGCAAATTCCTGATCGACGAAAGTTTTCAATTGCGCCAGCG10.5434782608695652No Hit
TACCCTTGCTTTCACATAATCTGCCCGCCGATTTTGCTGCGTTGCGTAAA10.5434782608695652No Hit
TGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGTCAGCCCGCACCGTTACCTG10.5434782608695652No Hit
CGCGTCTTGCACTCTTCGGTCTGAATGCTGCAACCACTTCCGGTGCCGTTTCAACGTATGGCCC10.5434782608695652No Hit
CCCCTCAAAAGATCGTAGACACTGCCCCACTGGCTGATTATTATGCCGCG10.5434782608695652No Hit
GCCGTTGGTACTGCGCGGATATGGTGCGGGCAATGACGTTACAGCT10.5434782608695652No Hit
GATGGAGCTTTCCTACTTCGGCGCTAAAGTTCTTCACCCCCGCACCATTA10.5434782608695652No Hit
GATTGCCGGAGAATTACAGCATTTTGGTGGCGATAGTATCGCCAACAAAC10.5434782608695652No Hit
TCAT10.5434782608695652No Hit
CGCTTGCCGTACAGATGACCAGGG10.5434782608695652No Hit
CACCTTTTGCCAATAATTTGTCTTTCATCAGCAGCGGCAGCAGCTCTTCC10.5434782608695652No Hit
GGTCGCCTCGGAGAAACTCATGCCTTCGTCTAACTTGCCGAAGATATAAGAAAGCG10.5434782608695652No Hit
TACGCAGAAGTTATCAAGTACCTCGTAGCGTATATACTTCTTAAACAATT10.5434782608695652No Hit
TATCTCCGGCAGCATTCATTACGACAACGTGGCACCGTGTTTTCTCGGTG10.5434782608695652No Hit
ATGCCCATGGCAAGAATAATACCGTCCAGAGCGAAATAACCCACGTTGTGC10.5434782608695652No Hit
CGAAGGGAGTGACAGACAGGCTTCAGAAGAGGTAGCGTGACCGACTTCCC10.5434782608695652No Hit
GCGTCTTTCCTATGACACCGAAGCGTCAATTGCGAAAGCAAAACGCCTGATCAAACTCTACAACGATGCTGG10.5434782608695652No Hit
ATTTAAAGATTTCGGCG10.5434782608695652No Hit
GGCGGTTGCGCTGACGTTGCGTCGTGATATCATCAGGGCAGACCGGTTAC10.5434782608695652No Hit
GTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGA10.5434782608695652No Hit
CGTAACC10.5434782608695652No Hit
ATTGCTGGAGGAATCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAG10.5434782608695652No Hit
ATGCCTTCTTTTTCCAGCTGTT10.5434782608695652No Hit
ATAATGTGGTGATTAATCTGGCGTCAGATGAGTATTTTAAATCGGTGAAG10.5434782608695652No Hit
ATACTGCGCTGAAAACCGTTAGTAATCGCCTGGCTTAAGGTATATCCCGCC10.5434782608695652No Hit
GTTGCCAGAACTTCGAAGGTTTTTTCGCCGTC10.5434782608695652No Hit
GTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCC10.5434782608695652No Hit
TGAACTGGAAACCCGCTTAATCCCCGATGAGCAGGCGATCATCGAGCAAA10.5434782608695652No Hit
TGAGAATGCCCGAGGGAAAGATCTGTATCAATTCTGGGGAGATATCATCA10.5434782608695652No Hit
CGAAAGTACCACCACCCAGGTCATAAACCGCGATAGTACGG10.5434782608695652No Hit
AATTTACGCCGCGATTTTTCCGCCGCATAACGCAACTGATGGTAGTAATC10.5434782608695652No Hit
GGATTTCCAGAC10.5434782608695652No Hit
CATGTCCTGCATGGCATTAG10.5434782608695652No Hit
GAAAGTGTTGCCTTTTTTGTACTCCAGCAGACCAGCAAAAATTTGCGCGA10.5434782608695652No Hit
AATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACAAGGG10.5434782608695652No Hit
TGAGCCGGGCGACGCCATGAAGACCGCGAGTGATTGCCAGCAGAGTAAAG10.5434782608695652No Hit
GGAAAGCATTCGCAAATGCTGTTGGGCAAAATCGAAATCGTCTTCGCTGAAGGTTTCGGCCTGCAAGCCGG10.5434782608695652No Hit
CGGGTAAGTTAAGGATCAGCGCCTGTTTGCGAATCACGCCCACCTGACGC10.5434782608695652No Hit
TTTTGCAGACTCACTCACTGCGGTTGACTACTAAATGGGGTCGTAAACCA10.5434782608695652No Hit
GTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTT10.5434782608695652No Hit
ATTGTTTTGAGATCCCCCCGCTCGGGGGG10.5434782608695652No Hit
TTCGATTTTGCCCAACAGCATTTGCGAATGCTTTCCGGCTTGTATGGCGT10.5434782608695652No Hit
TTAACATTCATTTTTTGTGGCTTCTATATTCTGGCGTTAGTCGTCGCCGA10.5434782608695652No Hit
AGAAG10.5434782608695652No Hit
GAATGTTAATTACCTGAATGATTCAGATCT10.5434782608695652No Hit
GCCGGACGCGCTTTCACTTCGCCG10.5434782608695652No Hit
GGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGAGTTCCTGTG10.5434782608695652No Hit
GCGGAACTGGCCCGGCGCGTCGTGACGTAACGCCCGATGCGACG10.5434782608695652No Hit
AACTGAAAGAAGGCTTACTGGA10.5434782608695652No Hit
CGGTCCGCTACTGCCAGCGTCGCATCGGGCGTTACGTCACGACGCGCCGGGCCAGTTCCGCCCG10.5434782608695652No Hit
CCGATAAACGCGGCAACCCACATCCAAAAGACGGCTCCAGGTC10.5434782608695652No Hit
AAGAGTACG10.5434782608695652No Hit

[OK]Adapter Content

Adapter graph