BLASTN 2.9.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Refseq viruses representative genomes
           13,213 sequences; 389,687,518 total letters



Query= mystery1

Length=209
                                                                      Score        E
Sequences producing significant alignments:                          (Bits)     Value

NC_026438.1 Influenza A virus (A/California/07/2009(H1N1)) segmen...  342        5e-93


>NC_026438.1 Influenza A virus (A/California/07/2009(H1N1)) segment 1 polymerase 
PB2 (PB2) gene, complete cds
Length=2280

 Score = 342 bits (185),  Expect = 5e-93
 Identities = 202/210 (96%), Gaps = 1/210 (0%)
 Strand=Plus/Plus

Query  1    TGATGATGTTGACCAAAGTTGGATTATCGCTGCTAGAAACATAGTAAGAAGAGCAGCAGT  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  756  TGATGATGTTGACCAAAGTTTGATTATCGCTGCTAGAAACATAGTAAGAAGAGCAGCAGT  815

Query  61   GTCAGCAGACCCA-TAGCATCTCTCTTGGAAATGTGCCACAGCACACAGATTGGAGGTGT  119
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  816  GTCAGCAGACCCATTAGCATCTCTCTTGGAAATGTGCCACAGCACACAGATTGGAGGAGT  875

Query  120  GAAGATGGTGGACATCCTTAGACAGAATCCAACTGACGAACAAGCCGTGGACATATGCAA  179
             | ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct  876  AAGGATGGTGGACATCCTTAGACAGAATCCAACTGAGGAACAAGCCGTAGACATATGCAA  935

Query  180  GGCAGCAATAGGGTTGAGGATCAGCTCATC  209
            ||||||||||||||||||||| ||||||||
Sbjct  936  GGCAGCAATAGGGTTGAGGATTAGCTCATC  965



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 71249948340


  Database: Refseq viruses representative genomes
    Posted date:  Sep 30, 2020  4:08 PM
  Number of letters in database: 389,687,518
  Number of sequences in database:  13,213



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5