[bwa_index] Pack FASTA... 0.00 sec
[bwa_index] Construct BWT for the packed sequence...
[bwa_index] 0.01 seconds elapse.
[bwa_index] Update BWT... 0.00 sec
[bwa_index] Pack forward-only FASTA... 0.00 sec
[bwa_index] Construct SA from BWT and Occ... 0.01 sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa index refs/AF086833.fa
[main] Real time: 0.418 sec; CPU: 0.016 sec
[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 20000 sequences (1400000 bp)...
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (0, 9951, 0, 0)
[M::mem_pestat] skip orientation FF as there are not enough pairs
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (465, 499, 533)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (329, 669)
[M::mem_pestat] mean and std.dev: (498.96, 50.15)
[M::mem_pestat] low and high boundaries for proper pairs: (261, 737)
[M::mem_pestat] skip orientation RF as there are not enough pairs
[M::mem_pestat] skip orientation RR as there are not enough pairs
[M::mem_process_seqs] Processed 20000 reads in 0.344 CPU sec, 0.344 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem refs/AF086833.fa read1.fq read2.fq
[main] Real time: 0.363 sec; CPU: 0.356 sec