Results generated by running the recipe.
Parameters used during the run:
Read 2000 spots for SRR6848065 Written 2000 spots for SRR6848065 Read 2000 spots for SRR6848056 Written 2000 spots for SRR6848056 Read 2000 spots for SRR6848054 Written 2000 spots for SRR6848054 Read 2000 spots for SRR6848033 Written 2000 spots for SRR6848033 Read 2000 spots for SRR6848055 Written 2000 spots for SRR6848055
+ SRA=/export/sra + PRJN=SRP135886 + RUNS=5 + READS=2000 + esearch -db sra -query SRP135886 + efetch -format runinfo + cat runinfo.csv + grep SRR + cut -f 1 -d , + head -5 + cat runids.txt + parallel fastq-dump --split-files -X 2000 --outdir /export/sra '{}' + mkdir -p fastqc + fastqc -o fastqc 'reads/*.fastq' Skipping 'reads/*.fastq' which didn't exist, or couldn't be read + rm -f 'fastqc/*.zip'