How to write recipes
Run Parameters
Parameters used during the run:
  • Read Length: 250
  • Cross Validate: True
  • P-Value Cutoff: 0.05
  • Sequencing Protocol: single
  • Select Instrument: pacbio
  • Reference Genome: Genome.fa
  • SRR Accesion Numbers: SRR numbers.txt
<ul>


            <li> Read Length:

                    <b>250</b>

            </li>



            <li> Cross Validate:

                    <b>True</b>

            </li>



            <li> P-Value Cutoff:

                    <b>0.05</b>

            </li>



            <li> Sequencing Protocol:

                    <b>single</b>

            </li>



            <li> Select Instrument:

                    <b>pacbio</b>

            </li>



            <li> Reference Genome:

                    <b>Genome.fa</b>

            </li>



            <li> SRR Accesion Numbers:

                    <b>SRR numbers.txt</b>

            </li>




</ul>

Result description.

File List
Files created by the recipe run:
Output Messages
Messages printed to the standard output stream:
Instrument: pacbio
Protocol: single
Cutoff: 0.05
Validate: True
Read length: 250
Reads: /export/sites/biostar-engine/export/media/projects/proj-tutorial/store-56bd2b99/genome.fa
SRR: /export/sites/biostar-engine/export/media/projects/proj-tutorial/store-e4c6e9e5/sra.txt
.
./data
./data/store
./data/store/srr.txt
./data/store/sequence-names.txt
./runlog
./runlog/stdout.txt
./runlog/stderr.txt
./runlog/input.json
./contents.txt
./recipe.sh
Other Messages
Messages printed to the standard error stream:


    

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