How to write recipes

Results generated by running the recipe.

Parameters used during the run:

  • Read Length:250
  • Cross Validate:True
  • P-Value Cutoff:0.05
  • Sequencing Protocol:single
  • Select Instrument:pacbio
  • Reference Genome:Genome.fa
  • SRR Accesion Numbers:SRR numbers.txt
File List
Files created by the recipe run:
Output Messages
Messages printed to the standard output stream:
Instrument: pacbio
Protocol: single
Cutoff: 0.05
Validate: True
Read length: 250
Reads: /export/sites/biostar-engine/export/media/projects/proj-tutorial/store-56bd2b99/genome.fa
SRR: /export/sites/biostar-engine/export/media/projects/proj-tutorial/store-e4c6e9e5/sra.txt
.
./data
./data/store
./data/store/srr.txt
./data/store/sequence-names.txt
./runlog
./runlog/stdout.txt
./runlog/stderr.txt
./runlog/input.json
./contents.txt
./recipe.sh
Other Messages
Messages printed to the standard error stream:


    

Powered by the release 2.3.6