Imported input/reference.fa as DNASequencesDirectoryFormat to output/reference.qza
Imported input/taxa_lineage.tsv as TSVTaxonomyDirectoryFormat to output/taxa_lineage.qza
Saved TaxonomicClassifier to: output/trained_reference.qza
Imported input/reads_manifest.txt as SingleEndFastqManifestPhred33V2 to output/reads.qza
Saved FeatureTable[Frequency] to: output/feature_table.qza
Saved FeatureData[Sequence] to: output/represetative_seqs.qza
Exported output/represetative_seqs.qza as DNASequencesDirectoryFormat to directory output
Saved FeatureData[Taxonomy] to: output/classified.qza
Exported output/feature_table.qza as BIOMV210DirFmt to directory output
Exported output/classified.qza as TSVTaxonomyDirectoryFormat to directory output
Saved FeatureTable[Frequency] to: output/species_table.qza
Exported output/species_table.qza as BIOMV210DirFmt to directory ./
Requirement already up-to-date: plac in /home/www/miniconda3/envs/qiime2/lib/python3.6/site-packages (1.2.0)

WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip.
Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue.
To avoid this problem you can invoke Python with '-m pip' instead of running pip directly.
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