This recipe performs an RNA Seq analysis of the Zika data using an alignment based method
This recipe reproduces the data analysis of published research.
Downloading the human reference files is not included in the recipe. These are a more substantial download and should be done only once then reused for different recipes.
To get the human genomic build and the human reference files use the [zika-references.sh][zika] helper script:
# Download the helper script wget http://data.biostarhandbook.com/redo/zika/zika-references.sh # Run the helper script to get the human genomic builds. bash zika-references.sh
Then run this recipe.
For more information see the