This recipe performs an RNA Seq analysis of the Zika data using a classification based method
This recipe reproduces the data analysis of published research.
Downloading the human reference files is not included in the recipe. These are a more substantial download and should be done only once then reused for different recipes.
To get the human genomic build and the human reference files use the zika-references.sh helper script:
# Download the helper script wget http://data.biostarhandbook.com/redo/zika/zika-references.sh # Run the helper script to get the human genomic builds. bash zika-references.sh
Then run this recipe.
For more information see the