Bioinformatics Recipe Cookbook
Simple Variant Calling

This recipe follows the variant calling process in the Biostar Handbook.

1 result • updated 19 months ago by Istvan Albert

This recipe follows the variant calling process in the Biostar Handbook.

With default parameters the recipe obtains the reference genome AF086833 (the Ebola Mayinga strain of 1976) and will align to it the sequencing data obtained from the 2014 outbreak deposited as SRA id SRR1972739

The recipe produces an alignment and a variant call files for the sequencing run. The results can be viewed relative to the Gene Feature file.

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