Bioinformatics Recipe Cookbook
Alignment Based RNA-Seq

RNA-Seq differential expression with alignments and using three different statistical methods.

1 result • updated 19 months ago by Istvan Albert

RNA-Seq differential expression with alignments and using three different statistical methods.

A common RNA-Seq data analysis approach is one where sequencing reads are aligned with a "splice" aware aligner.

In this recipe we run follow the concepts presented in chapter:

https://www.biostarhandbook.com/rnaseq/rnaseq-griffith-data.html

and produce differential expression results with three different statistical methods: deseq1, deseq2 and edgeR

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