Bioinformatics Recipe Cookbook
FASTQ data quality control

Perform data quality control on FASTQ data

3 results • updated 19 months ago by Istvan Albert

Perform data quality control on FASTQ data

This recipe serves as the introductory recipe for the course and this entire site.

The recipe code will demonstrate the following:

  1. Downloading sequencing data from SRA
  2. Generating a FASTQC report on this data
  3. Trimming Illumina adapters from the dataset in paired-end mode
  4. Generating a FASTQC report on the trimmed data

Lectures

A detailed presentation that explains the steps and rationale of the site and this recipe can be read at:

Please refer to the lectures above for links to the chapters that cover each concept.

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