Perform data quality control on FASTQ data
This recipe serves as the introductory recipe for the course and this entire site.
The recipe code will demonstrate the following:
- Downloading sequencing data from SRA
- Generating a FASTQC report on this data
- Trimming Illumina adapters from the dataset in paired-end mode
- Generating a FASTQC report on the trimmed data
A detailed presentation that explains the steps and rationale of the site and this recipe can be read at:
Please refer to the lectures above for links to the chapters that cover each concept.