Bioinformatics Recipe Cookbook
Mission Impossible: Multi Sample Variant Calling in 60 seconds

Your mission, should you choose to accept it, is to reproduce major findings of a Science paper in …

1 result • updated 7 months ago by Bioinformatics Admin

Your mission, should you choose to accept it, is to reproduce major findings of a Science paper in just 60 seconds.

This recipe is based on a fun diversion that I show during lectures. The goal of the recipe is to demonstrate that, when properly documented it is possible to reproduce major scienific findings with relative ease t and sometimes under a minute.

This recipe reproduces the main results published in the work:

On a properly set up system, and depending on bandwidth, the recipe completes under a minute. This includes getting the data, references, aligning and calling variants! The results even include annotations of the variant effects relative to the features on the genome.

The best way to enjoy this analysis is to have the following video playing while the analyis is running:

https://www.youtube.com/watch?v=yLo9k8Gifb0

You win and save the world if you can finish running the analysis before the music stops.

Note how this theme song makes even the otherwise bland analysis feel super exciting.

Copy recipe
You need write access to the original recipe to edit.
You need write access to the original recipe to edit.
Recipe Interface Builder
Click the buttons on the right to create new fields.
Interface Editor
Edit the content of each interface element.
You need write access to the original recipe to edit.
Edit Recipe
Recipe display name
Unique identifier for the recipe.

Determines who can run a recipe.

Image :
Optional image for the recipe ( 500px Maximum ).
Rank:
Used to order recipes (optional).

Insert Image

Back

Powered by the release 2.3