This recipe runs eDNAoccupancy R package to estimate the occurrence of a species by modeling eDNA data.
- Presence/absence eDNA detection data in CSV format.
- Metadata file in CSV format.
Detection file format
In the presence/absence table, the site column should have the header label
site, the column specifying sample should have the sample
sample. The rest of the headers should be sample names. The presence and absence values should be encoded with
An example presence/absence table:
The metadata headers should list the various labels associated with the site. The labels will be used as parameter entries in the interface.
In this example the usable paramters then would be
Parameter selection tips
- While running the recipe,
~ should prefix the covariate specification.
~1 in the text field if a covariate is none.
- Multiple covariates can be combined using
- An example covariate specification is
Covariates entered should match the column headers in the metadata file.