This recipe runs eDNAoccupancy R package to estimate the occurrence of a species by modeling eDNA data.
In the presence/absence table, the site column should have the header label
site, the column specifying sample should have the sample
sample. The rest of the headers should be sample names. The presence and absence values should be encoded with
An example presence/absence table:
site,sample,pcr1,pcr2,pcr3,pcr4,pcr5,pcr6 Hunter_Creek,1,0,0,0,0,0,0 Pistol_River,1,0,0,0,0,0,0 Winchuck_River,1,0,0,0,0,0,0 Tillas_Slough,1,0,0,0,0,0,0 Lake_Earl,1,1,1,1,1,1,1 Elk_Creek,1,0,0,0,0,0,0
The metadata headers should list the various labels associated with the site. The labels will be used as parameter entries in the interface.
site,twg,sal,turb,fish,veg Hunter_Creek,0,7.2,60,0,0 Pistol_River,0,13,50,0,0 Winchuck_River,0,2,43,0,0 Tillas_Slough,17.8,9,236.8,160.9,1 Lake_Earl,1.06,4,124.15,113,1 Elk_Creek,0,30,144.67,19.3,0
In this example the usable paramters then would be
~should prefix the covariate specification.
~1in the text field if a covariate is none.
Covariates entered should match the column headers in the metadata file.