How to download sequencing data via Entrez Direct

How to download sequencing data via Entrez Direct

This recipe demonstrates the basic use of Entrez Direct from the command line

1 result • updated 5 months ago by Istvan Albert • needs authorization

This recipe demonstrates the basic use of Entrez Direct from the command line

The recipe has code that shows how to:

  1. Download nucleotide and protein sequences associated with individual NCBI accession numbers.
  2. Download sequence run information associated with NCBI bioproject ids.
  3. Download nucleotide and protein sequences associated with an NCBI bioproject ids.

By default the script accesses BioProject PRJNA257197:

For more information see the:

Copy recipe
You need write access to the project to edit.
You need write access to the original recipe to edit.
Recipe Interface Builder
Click the buttons on the right to create new fields.
Interface Editor
Edit the content of each interface element.
You need write access to the original recipe to edit.
Edit Recipe
Recipe display name
Unique identifier for the recipe.
Image :
Optional image for the recipe ( 500px Maximum ).
Rank:
Used to order recipes (optional).

Insert Image

Back

Powered by the release 2.3.3