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updated 23 months ago
by
Istvan Albert
This recipe follows the variant calling process in the Biostar Handbook.
Ensure that you have the bio
package installed.
pip install bio --upgrade
The recipe obtains the reference genome AF086833
(the Ebola Mayinga strain of 1976) and will align it the sequencing data obtained from the 2014 outbreak deposited as SRA id SRR1972739
The recipe produces:
For more information see: