How to create and query a custom BLAST database

How to create and query a custom BLAST database

This recipe demonstrates the creation of custom nucleotide and protein databases.

1 result • updated 5 weeks ago by Istvan Albert

This recipe demonstrates the creation of custom nucleotide and protein databases.

The recipe download the genomic and proteomic data described in Genomic surveillance elucidates Ebola virus origin then creates BLAST ready databases that is then queried with:

>mystery
ATGGACTCTCGTCCTCAGAAAGTCTGGATGACGCCGAGTCTCACTGAATCTGACATGGAT
TACCACAAGATCTTGACAGCAGGTCTGTCCGTTCAACAGGGGGTTGTTCGGCAAAGAGTC
ATCCCAGTGTATCAAGTAAACAATCTTGAG

Various example outputs can be seen for searches in nucleotide and peptide space.

For more information see the

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