How to trim adapters from microRNA data

How to trim adapters from microRNA data

This recipe performs data quality control with the tool cutadapt on microRNA FASTQ data downloaded …

1 result • updated 18 days ago by Istvan Albert

This recipe performs data quality control with the tool cutadapt on microRNA FASTQ data downloaded from SRA.

It selects and downloads data deposited for an SRA BioProject, the value is: PRJNA272617

The recipe trims Illumina sequencing adapters from the end of sequences then performs a sliding window approach for correcting trailing low-quality sequences.

The recipe demonstrates other advanced techniques, for example selecting the smallest run from all the sequencing runs deposited for the project while also demonstrating the proper use of automation via loops constructed for parallel.

Finally, quality control reports are generated with fastqc.

For more information see the

Copy recipe
You need write access to the project to edit.
You need write access to the original recipe to edit.
Recipe Interface Builder
Click the buttons on the right to create new fields.
Interface Editor
Edit the content of each interface element.
You need write access to the original recipe to edit.
Edit Recipe
Recipe display name
Unique identifier for the recipe.
Image :
Optional image for the recipe ( 500px Maximum ).
Rank:
Used to order recipes (optional).

Insert Image

Back

Powered by the release 2.3.1