Results generated by running the recipe.
Parameters used during the run:
Read 2000 spots for SRR1972920 Written 2000 spots for SRR1972920 Read 2000 spots for SRR1972917 Written 2000 spots for SRR1972917 Read 2000 spots for SRR1972921 Written 2000 spots for SRR1972921 Read 2000 spots for SRR1972919 Written 2000 spots for SRR1972919 Read 2000 spots for SRR1972918 Written 2000 spots for SRR1972918 Analysis complete for SRR1972917_1.fastq Analysis complete for SRR1972917_2.fastq Analysis complete for SRR1972918_1.fastq Analysis complete for SRR1972918_2.fastq Analysis complete for SRR1972919_1.fastq Analysis complete for SRR1972919_2.fastq Analysis complete for SRR1972920_1.fastq Analysis complete for SRR1972920_2.fastq Analysis complete for SRR1972921_1.fastq Analysis complete for SRR1972921_2.fastq
+ PRJN=PRJNA257197 + RUNS=5 + READS=2000 + esearch -db sra -query PRJNA257197 + efetch -format runinfo + cat runinfo.csv + grep SRR + cut -f 1 -d , + head -5 + mkdir -p reads + cat runids.txt + parallel fastq-dump --split-files -X 2000 -outdir reads '{}' + mkdir -p fastqc + fastqc -o fastqc reads/SRR1972917_1.fastq reads/SRR1972917_2.fastq reads/SRR1972918_1.fastq reads/SRR1972918_2.fastq reads/SRR1972919_1.fastq reads/SRR1972919_2.fastq reads/SRR1972920_1.fastq reads/SRR1972920_2.fastq reads/SRR1972921_1.fastq reads/SRR1972921_2.fastq Started analysis of SRR1972917_1.fastq Approx 50% complete for SRR1972917_1.fastq Approx 100% complete for SRR1972917_1.fastq Started analysis of SRR1972917_2.fastq Approx 50% complete for SRR1972917_2.fastq Approx 100% complete for SRR1972917_2.fastq Started analysis of SRR1972918_1.fastq Approx 50% complete for SRR1972918_1.fastq Approx 100% complete for SRR1972918_1.fastq Started analysis of SRR1972918_2.fastq Approx 50% complete for SRR1972918_2.fastq Approx 100% complete for SRR1972918_2.fastq Started analysis of SRR1972919_1.fastq Approx 50% complete for SRR1972919_1.fastq Approx 100% complete for SRR1972919_1.fastq Started analysis of SRR1972919_2.fastq Approx 50% complete for SRR1972919_2.fastq Approx 100% complete for SRR1972919_2.fastq Started analysis of SRR1972920_1.fastq Approx 50% complete for SRR1972920_1.fastq Approx 100% complete for SRR1972920_1.fastq Started analysis of SRR1972920_2.fastq Approx 50% complete for SRR1972920_2.fastq Approx 100% complete for SRR1972920_2.fastq Started analysis of SRR1972921_1.fastq Approx 50% complete for SRR1972921_1.fastq Approx 100% complete for SRR1972921_1.fastq Started analysis of SRR1972921_2.fastq Approx 50% complete for SRR1972921_2.fastq Approx 100% complete for SRR1972921_2.fastq + rm -f fastqc/SRR1972917_1_fastqc.zip fastqc/SRR1972917_2_fastqc.zip fastqc/SRR1972918_1_fastqc.zip fastqc/SRR1972918_2_fastqc.zip fastqc/SRR1972919_1_fastqc.zip fastqc/SRR1972919_2_fastqc.zip fastqc/SRR1972920_1_fastqc.zip fastqc/SRR1972920_2_fastqc.zip fastqc/SRR1972921_1_fastqc.zip fastqc/SRR1972921_2_fastqc.zip